2023
1. Liu Shengwei, Zeng Jiaxiong, Yu Huang, Wang Cheng, Yang Yunfeng, Wang Jianjun, He Zhili, Yan Qingyun*. Antimony efflux underpins phosphorus cycling and resistance of phosphate-solubilizing bacteria in mining soils. The ISME Journal, https://doi.org/10.1038/s41396-023-01445-6.
2. Zhang Dandan, Yu Huang, Yang Yuchun, Liu Fei, Li Mingyue, Huang Jie, Yu Yuhe, Wang Cheng, Jiang Feng, He Zhili, Yan Qingyun*. Ecological interactions and the underlying mechanism of anammox and denitrification across the anammox enrichment with eutrophic lake sediments. Microbiome, 2023, 11: 82.
3. Su Erxin#, Wu Yongjie#, Chen Pubo, Yu Huang, Liu Shengwei, Luo Hongtian, Yang Yufeng, Wang Cheng, Shu Longfei, Wu Bo, He Zhili, Yan Qingyun*. Dietary selenium regulates the diversity and stability of microbial communities in stomach and intestine of rabbitfish (Siganus oramin). Aquaculture, 2023, 56: 738979.
4. Wang Binhao, Ma Bin, Stirling Erinne, He Zhili, Zhang Hanjun, Yan Qingyun*. Freshwater trophic status mediates microbial community assembly and interdomain network complexity. Environmental Pollution, 2023, 316: 120690.
5. Zheng Xiafei, Xu Kui, Naoum Jonathan, Lian Yingli, Wu Bo, He Zhili, Yan Qingyun*. Deciphering microeukaryotic-bacterial co-occurrence networks in coastal aquaculture ponds. Marine Life Science & Technology, 2023, 5: 44-55.
6. Xu Yifan, Liu Huanping, Yang Yufeng, Shen Hongtao, Zhuang Ruimin, Wang Cheng, Huang Zhijian, He Jianguo, He zhili, Yan Qingyun*. Assessment of carbon sink potential and methane reduction scenarios of marine macroalgae (Gracilaria) cultivation. Science China-Earth Sciences, 2023, 66: 1047-1061.
7. Zhou Min, Guan Xiaotong, Deng Ting, Hu Ruiwen, Qian Lu, Yang Xueqin, Wu Bo, Li Juan, He Qiang, Shu Longfei, Yan Qingyun*, He Zhili*. Synthetic phylogenetically diverse communities promote denitrification and stability. Environmental Research, 2023, 231: 116184.
8. 徐一凡, 刘焕平, 杨宇峰, 沈洪涛, 张睿敏, 王成, 黄志坚, 何建国, 贺志理, 颜庆云*. 大型海藻江蓠(Gracilaria)栽培碳汇潜力评估及甲烷减排情景分析. 中国科学: 地球科学, 2023, 53: 1039-1056.
9. Qian Lu, Yu Xiaoli*, Gu Hang, Liu Fei, Fan Yijun, Wang Cheng, He Qiang, Tian Yun, Peng Yisheng, Shu Longfei, Wang Shanquan, Huang Zhijian, Yan Qingyun, He Jianguo, Liu Guangli, Tu Qichao, He Zhili*. Vertically stratified methane, nitrogen and sulphur cycling and coupling mechanisms in mangrove sediment microbiomes. Microbiome, 2023, 11: 71.
10. Mai Yingwen, Zheng Jianyi, Zeng Jiaxiong, Wang Zihe, Liu Fei, Ma Lu, Zhou Min, Zhao Shanshan, Wu Bo, Wang Cheng, Yan Qingyun, He Zhili, Shu Longfei*. Protozoa as hotspots for potential pathogens in the drinking water of a subtropical megacity: diversity, treatment, and health risk. Environmental Science & Technology, 2023, 57: 6108-6118.
11. Wu Bo, Guan Xiaotong, Deng Ting, Yang Xueqin, Li Juan, Zhou Min, Wang Cheng, Wang Shanquan, Yan Qingyun, Shu Longfei, He Qiang, He Zhili*. Synthetic denitrifying communities reveal a positive and dynamic biodiversity-ecosystem functioning relationship during experimental evolution. Microbiology Spectrum, https://doi.org/10.1128/spectrum.04528-22.
12. Wang Zihe, Huang Wei, Mai Yingwen, Tian Yuehui, Wu Bo, Wang Cheng, Yan Qingyun, He Zhili, Shu Longfei*. Environmental stress promotes the persistence of facultative bacterial symbionts in amoebae. Ecology and Evolution, http://doi.org/10.1002/ece3.9899.
13. Meng Yabing, Wang Depeng*, Yu Zhong, Yan Qingyun, He Zhili, Meng Fangang*. Genome-resolved metagenomic analysis reveals different functional potentials of multiple Candidatus Brocadia species in a full-scale swine wastewater treatment system. Frontiers of Environmental Science & Engineering, 2023, 17: 2.
2022
1. Zhang Dandan, Li Mingyue, Yang Yuchun, Yu Huang, Xiao Fanshu, Mao Chengzhi, Huang Jie, Yu Yuhe, Wang Yunfeng, Wu Bo, Wang Cheng, Shu Longfei, He Zhili, Yan Qingyun*. Nitrite and nitrate reduction drive sediment microbial nitrogen cycling in a eutrophic lake. Water Research, 2022, 220: 118637.
2. Yu Huang, Yan Xizhe, Weng Wanlin, Xu Sihan, Xu Guizhi, Gu Tianyuan, Guan Xiaotong, Liu Shengwei, Chen Pubo, Wu Yongjie, Xiao Fanshu, Wang Cheng, Shu Longfei, Wu Bo, Qiu Dongru, He Zhili, Yan Qingyun*. Extracellular proteins of Desulfovibrio vulgaris as adsorbents and redox shuttles promote biomineralization of antimony. Journal of Hazardous Materials, 2022, 426: 127795.
3. Yu Huang#, He Zhenzhen#, He Zhili, Yan Qingyun*, Shu Longfei*. Soil amebae affect iron and chromium reduction through preferential predation between two metal-reducing bacteria. Environmental Science & Technology, 2022, 56: 9052-9062.
4. Zeng Jiaxiong, Tu Qichao, Yu Xiaoli, Qian Lu, Wang Cheng, Shu Longfei, Liu Fei, Liu Shengwei, Huang Zhijian, He Jianguo, Yan Qingyun*, He Zhili*. PCycDB: a comprehensive and accurate database for fast analysis of phosphorus cycling genes. Microbiome, 2022, 10: 101.
5. Xiao Fanshu, Zhu Wengen, Yu Yuhe, Huang Jie, Li Juan, He Zhili, Wang Jianjun, Yin Huaqun, Yu Huang, Liu Shengwei, Chen Pubo, Huang Zhijian, He Jianguo, Wang Cheng, Shu Longfei, Yan Qingyun*. Interactions and stability of gut microbiota in zebrafish increase with host development. Microbiology Spectrum, 2022, 10: e01696-21.
6. Chen Pubo#, Huang Jie#, Rao Liuyu, Zhu Wengen, Yu Yuhe, Xiao Fanshu*, Yu Huang, Wu Yongjie, Hu Ruiwen, Liu Xingyu, He Zhili, Yan Qingyun*. Environmental effects of nanoparticles on the ecological succession of gut microbiota across zebrafish development. Science of the Total Environment, 2022, 806: 150963.
7. Yu Huang#, Zhong Qiuping#, Peng Yisheng, Zheng Xiafei, Xiao Fanshu, Wu Bo, Yu Xiaoli, Luo Zhiwen, Shu Longfei, Wang Cheng, Yan Qingyun*, He Zhili*. Environmental filtering by pH and salinity jointly drives prokaryotic community assembly in coastal wetland sediments. Frontier in Marine Science, 2022, 8: 792294.
8. Liu Shengwei, Yu Huang, Yu Yuhe, Huang Jie, Zhou Zhengyuan, Zeng Jiaxiong, Chen Pubo, Xiao Fanshu, He Zhili, Yan Qingyun*. Ecological stability of microbial communities in Lake Donghu regulated by keystone taxa. Ecological Indicators, 2022, 136: 108695.
9. Zheng Xiafei, He Zhili, Wang Cheng, Yan Qingyun*, Shu Longfei*. Evaluation of different primers of the 18S rRNA gene to profile amoeba communities in environmental samples. Water Biology and Security, 2022, 1: 100057.
10. Liu Zhenghua, Yan Qingyun, Jiang Chengying, Li Juan, Jian Huahua, Fan Lu, Zhang Rui, Xiao Xiang, Meng Delong, Liu Xueduan, Wang Jianjun*, Yin Huaqun*. Growth rate determines prokaryote-provirus network modulated by temperature and host genetic traits. Microbiome, 2022, 10: 92.
11. Zhang Siyi, He Zhenzhen, Wu Chenyuan, Wang Zihe, Mai Yingwen, Hu Ruiwen, Zhang Xiaojie, Huang Wei, Tian Yuehui, Xia Dehua, Wang Cheng, Yan Qingyun, He Zhili*, Shu Longfei*. Complex bilateral interactions determine the fate of polystyrene micro- and nanoplastics and soil protists: implications from a soil amoeba. Environmental Science & Technology, 2022, 56: 4936-4949.
12. Hu Ruiwen, Liu Songfeng, Huang Weiming, Nan Qiong, Strong P. J., Saleem Muhammad, Zhou Zhengyuan, Luo Zhiwen, Shu Fangqi, Yan Qingyun, He Zhili, Wang Cheng*. Evidence for assimilatory nitrate reduction as a previously overlooked pathway of reactive nitrogen transformation in estuarine suspended particulate matter. Environmental Science & Technology, 2022, 56: 14852-14866.
13. Qian Lu, Yu Xiaoli, Zhou Jiayin, Gu Hang, Ding Jijuan, Peng Yisheng, He Qiang, Tian Yun, Liu Jihua, Wang Shanquan, Wang Cheng, Shu Longfei, Yan Qingyun, He Jianguo, Liu Guangli*, Tu Qichao*, He Zhili*. MCycDB: a curated database for comprehensively profiling methane cycling processes of environmental microbiomes. Molecular Ecology Resources, 2022, 22: 1803-1823.
14. Hou Dongwei, Zhou Renjun, Wei Dongdong, Zeng Shenzheng, Weng Shaoping, Yan Qingyun, He Jianguo*, Huang Zhijian*. Abundant and rare microbial communities respectively contribute to an aquaculture pond ecosystem. Frontiers in Marine Science, 2022, 9: 856126.
15. Liu Zhenghua, Wang Jianjun, Meng Delong, Li Liangzhi, Liu Xueduan, Gu Yabing, Yan Qingyun, Jiang Chengying, Yin Huaqun*. The self-organization of marine microbial networks under evolutionary and ecological processes: observations and modeling. Biology, 2022, 11: 592.
16. Wang Yunfeng, Li Xinghao, Chi Yong, Song Weibo, Yan Qingyun, Huang Jie*. Changes of the freshwater microbial community structure and assembly processes during different sample storage conditions. Microorganisms, 2022, 10: 1176.
17. Yang Xueqin, Yu Xiaoli, He Qiang, Deng Ting, Guan Xiaotong, Lian Yingli, Xu Kui, Shu Longfei, Wang Cheng, Yan Qingyun, Yang Yuchun, Wu Bo*, He Zhili*. Niche differentiation among comammox (Nitrospira inopinata) and other metabolically distinct nitrifiers. Frontiers in Microbiology, 2022, 13: 956860.
2021
1. Yu Huang#, Liu Xingyu#, Yang Chao, Peng Yisheng, Yu Xiaoli, Gu Hang, Zheng Xiafei, Wang Cheng, Xiao Fanshu, Shu Longfei, He Zhili, Wu Bo*, Yan Qingyun*. Co-symbiosis of arbuscular mycorrhizal fungi (AMF) and diazotrophs promote biological nitrogen fixation in mangrove ecosystems. Soil Biology & Biochemistry, 2021, 161: 108382.
2. Yu Huang, Zheng Xiafei, Weng Wanlin, Yan Xizhe, Chen Pubo, Liu Xingyu, Peng Tao, Zhong Qiuping, Xu Kui, Wang Cheng, Shu Longfei, Yang Tony, Xiao Fanshu, He Zhili, Yan Qingyun*. Synergistic effects of antimony and arsenic contaminations on bacterial, archaeal and fungal communities in the rhizosphere of Miscanthus sinensis: insights for nitrification and carbon mineralization. Journal of Hazardous Materials, 2021, 411: 125094.
3. Xiao Fanshu#, Zhu Wengen#, Yu Yuhe, He Zhili, Wu Bo, Wang Cheng, Shu Longfei, Li Xinghao, Yin Huaqun, Wang Jianjun, Juneau Philippe, Zheng Xiafei, Wu Yongjie, Li Juan, Chen Xiaojuan, Hou Dongwei, Huang Zhijian, He Jianguo, Xu Guohuan, Xie Liwei, Huang Jie*, Yan Qingyun*. Host development overwhelms environmental dispersal in governing the ecological succession of zebrafish gut microbiota. npj Biofilms and Microbiomes, 2021, 7: 5.
4. Zheng Xiafei, Zhang Keke, Yang Tony, He Zhili, Shu Longfei, Xiao Fanshu, Wu Yongjie, Wang Binhao, Yu Huang, Yan Qingyun*. Sediment resuspension drives protist metacommunity structure and assembly in grass carp (Catenopharyngodon idella) aquaculture ponds. Science of the Total Environment, 2021, 764: 142840.
5. Wang Binhao, Stirling Erinne, He Zhili, Ma Bin, Zhang Hangjun, Zheng Xiafei, Xiao Fanshu, Yan Qingyun*. Pollution alters methanogenic and methanotrophic communities and increases dissolved methane in small ponds. Science of the Total Environment, 2021, 801: 149723.
6. Xiao Fanshu, Liao Lanjie, Xu Qiaoqing, He Zhili, Xiao Tiaoyi, Wang Jianjun, Huang Jie, Yu Yuhe, Wu Bo, Yan Qingyun*. Host-microbiota interactions and responses to grass carp reovirus infection in Ctenopharyngodon idellus. Environmental Microbiology, 2021, 23: 431-447.
7. Chen Pubo#, Huang Jie#, Rao Liuyu, Zhu Wengen, Yu Yuhe, Xiao Fanshu, Chen Xiaojuan, Yu Huang, Wu Yongjie, Xu Kui, Zheng Xiafei, Hu Ruiwen, He Zhili, Yan Qingyun*. Resistance and resilience of fish gut microbiota to silver nanoparticles. mSystems, 2021, 6: e00630-21.
8. Li Mingyue, Fang Anqi, Yu Xiaoli, Zhang Keke, He Zhili, Wang Cheng, Peng Yisheng, Xiao Fanshu*, Yang Tony, Zhang Wei, Zheng Xiafei, Zhong Qiuping, Liu Xingyu, Yan Qingyun*. Microbially-driven sulfur cycling microbial communities in different mangrove sediments. Chemosphere, 2021, 273: 128597.
9. Li Mingyue, Zhang Jiachao*, Yang Xiao, Zhou Yaoyu, Zhang Lihua, Yang Yuan, Luo Lin, Yan Qingyun*. Responses of ammonia-oxidizing microorganisms to biochar and compost amendments of heavy metals-polluted soil. Journal of Environmental Sciences, 2021, 102: 263-272.
10. Wang Binhao, Zheng Xiafei, Zhang Hangjun, Yu Xiaoli, Lian Yingli, Yang Xueqin, Yu Huang, Hu Ruiwen, He Zhili, Xiao Fanshu*, Yan Qingyun*. Metagenomic insights into the effects of submerged plants on microbial functions in wetland sediments. Marine Life Science & Technology, 2021, 3: 405-415.
11. Luo Zhiwen, Zhong Qiuping, Han Xingguo, Hu Ruiwen, Liu Xingyu, Xu Wenjun, Wu Yongjie, Huang Weiming, Zhou Zhengyuan, Zhuang Wei, Yan Qingyun, He Zhili, Wang Cheng*. Depth-dependent variability of biological nitrogen fixation and diazotrophic communities in mangrove sediments. Microbiome, 2021, 9: 212.
12. Yu Xiaoli, Zhou Jiayin, Song Wen, Xu Mengzhao, He Qiang, Peng Yisheng, Tian Yun, Wang Cheng, Shu Longfei, Wang Shanquan, Yan Qingyun, Liu Jihua, Tu Qichao*, He Zhili*. SCycDB: a curated functional gene database for metagenomic profiling of sulfur cycling pathways. Molecular Ecology Resources, 2021, 21: 924-940.
13. Wang Cheng, Hu Ruiwen, Strong P.J., Zhuang Wei, Huang Weiming, Luo Zhiwen, Yan Qingyun, He Zhili, Shu Longfei*. Prevalence of antibiotic resistance genes and bacterial pathogens along the soil-mangrove root continuum. Journal of Hazardous Materials, 2021, 408: 124985.
14. Shi Yijing, Queller David C., Tian Yuehui, Zhang Siyi, Yan Qingyun, He Zhili, He Zhenzhen, Wu Chenyuan, Wang Cheng*, Shu Longfei*. The ecology and evolution of amoeba-bacteria interactions. Applied and Environmental Microbiology, 2021, 87: e01866-20.
15. Xu Kui, Li Zhou, Juneau Philippe, Xiao Fanshu, Lian Yingli, Zhang Wei, Shu Longfei, Jiang Haibo, Zhang Keke, Wang Cheng, Wang Shanquan, Yan Qingyun, He Zhili*. Toxic and protective mechanisms of cyanobacterium Synechocystis sp. in response to titanium dioxide nanoparticles. Environmental Pollution, 2021, 274, 116508.
16. Li Huabing, Zeng Jin*, Ren Lijuan, Yan Qingyun, Wu Qinglong L.*. Enhanced metabolic potentials and functional gene interactions of microbial stress responses to a 4,100-m elevational increase in freshwater lakes. Frontiers in Microbiology, 2021, 11: 595967.
17. Zhao Libin, Xu Kui*, Juneau Philippe, Huang Peihuan, Lian Yingli, Zheng Xiafei, Zhong Qiuping, Zhang Wei, Xiao Fanshu, Wu Bo, Yan Qingyun, He Zhili*. Light modulates the effect of antibiotic norfloxacin on photosynthetic processes of Microcystis aeruginosa. Aquatic Toxicology, 2021, 235: 105826.
18. Hu Ruiwen, Zhao Haiming, Xu Xihui, Wang Zhigang, Yu Ke, Shu Longfei, Yan Qingyun, Wu Bo, Mo Cehui, He Zhili, Wang Cheng*. Bacteria-driven phthalic acid ester biodegradation: current status and emerging opportunities. Environment International, 2021, 154: 106560.
19. Shu Longfei, He Zhenzhen, Guan Xiaotong, Yang Xueqin, Tian Yuehui, Zhang Siyi, Wu Chenyuan, He Zhili, Yan Qingyun, Wang Cheng*, Shi Yijing*. A dormant amoeba species can selectively sense and predate on different soil bacteria. Functional Ecology, 2021, 35: 1708-1721.
20. Ding Xiaowei, Liu kaihui*, Yan Qingyun, Liu Xingyu, Chen Ni, Wang Guoliang, He Shuai. Sugar and organic acid availability modulate soil diazotroph community assembly and species co-occurrence patterns on the Tibetan Plateau. Applied Microbiology and Biotechnology, 2021, 105: 8545-8560.
21. Zhou Zhengyuan, Hu Ruiwen, Ni Yanmei, Zhuang Wei, Luo Zhiwen, Huang Weiming, Yan Qingyun, He Zhili, Zhong Qiuping, Wang Cheng*. Genetic elucidation of quorum sensing and cobamide biosynthesis in divergent bacterial-fungal associations across the soil-mangrove root interface. Frontiers in Microbiology, 2021, 12: 698385.
22. Huang Zhijian#, Hou Dongwei#, Zhou Renjun, Zeng Shenzheng, Xing Chengguang, Wei Dongdong, Deng Xisha, Yu Lingfei, Wang Hao, Deng Zhixuan, Weng Shaoping, Ning Daliang, Xiao Chuanle, Yan Qingyun, Zhou Jizhong, He Zhili*, He Jianguo*. Environmental water and sediment microbial communities shape intestine microbiota for host health: the central dogma in an anthropogenic aquaculture ecosystem. Frontiers in Microbiology, 2021, 12: 772149.
23. 赵立斌, 徐魁*, 连英丽, 颜庆云, 贺志理*. 原绿球藻对环境胁迫的生理和分子响应机制. 微生物学报, 2021, 61: 1143-1159.
2020
1. Wu Bo, Liu Feifei, Zhou Aifen, Li Juan, Shu Longfei, Kempher Megan L., Yang Xueqin, Ning Daliang, Pan Feiyan, Zane Grant M., Wall Judy D., Van Nostrand Joy D., Juneau Philippe, Chen Shouwen*, Yan Qingyun*, Zhou Jizhong*, He Zhili*. Experimental evolution reveals nitrate tolerance mechanisms in Desulfovibrio vulgaris. The ISME Journal, 2020, 14: 2862-2876.
2. He Zhili#*, Deng Ye#, Xu Meiying#, Li Juan, Liang Junyi, Xiong Jinbo, Yu Hao, Wu Bo, Wu Liyou, Xue Kai, Shi Shengjing, Carrillo Yolima, Van Nostrand Joy D., Hobbie Sarah E., Reich Peter B., Schadt Christopher W., Kent Angela D., Pendall Elise, Wallenstein Matthew, Luo Yiqi, Yan Qingyun*, Zhou Jizhong*. Microbial functional genes commonly respond to elevated carbon dioxide. Environment International, 2020, 144: 106068.
3. Liu Xingyu#, Yang Chao#, Yu Xiaoli, Yu Huang, Zhuang Wei, Gu Hang, Xu Kui, Zheng Xiafei, Wang Cheng, Xiao Fanshu, Wu Bo, He Zhili, Yan Qingyun*. Revealing structure and assembly for rhizophyte-endophyte diazotrophic community in mangrove ecosystem after introduced Sonneratia apetala and Laguncularia racemose. Science of the Total Environment, 2020, 721: 137807.
4. Wang Binhao, Zheng Xiafei, Zhang Hangjun, Xiao Fanshu, Gu Hang, Zhang Keke, He Zhili, Liu Xiang, Yan Qingyun*. Bacterial community responses to tourism development in the Xixi National Wetland Park, China. Science of the Total Environment, 2020, 720: 137570.
5. Wang Binhao, Zheng Xiafei, Zhang Hangjun, Xiao Fanshu*, He Zhili, Yan Qingyun*. Keystone taxa of water microbiome respond to environmental quality and predict water contamination. Environmental Research, 2020, 187: 109666.
6. Zhang Keke, Zheng Xiafei*, He Zhili, Yang Tony, Shu Longfei, Xiao Fanshu, Wu Yongjie, Wang Binhao, Li Zhou, Chen Pubo, Yan Qingyun*. Fish growth enhances microbial sulfur cycling in aquaculture pond sediments. Microbial Biotechnology, 2020, 13: 1597-1610.
7. Wu Yongjie, Xiao Fanshu*, Wang Cheng, Shu Longfei, Zheng Xiafei, Xu Kui, Yu Xiaoli, Zhang Keke, Luo Hongtian, Yang Yufeng, He Zhili, Yan Qingyun*. The beta-diversity of Siganus fuscescens-associated microbial communities from different habitats increases with body weight. Frontiers in Microbiology, 2020, 11: 1562.
8. Yu Huang, Yan Xizhe, Zheng Xiafei, Xu Kui, Zhong Qiuping, Yang Tony, Liu Feifei, Wang Cheng, Shu Longfei, He Zhili, Xiao Fanshu*, Yan Qingyun*. Differential distribution of and similar biochemical responses to different species of arsenic and antimony in Vetiveria zizanioides. Environmental Geochemistry and Health, 2020, 42: 3995-4010.
9. Zheng Xiafei, Wang Yan*, Yang Tony, He Zhili, Yan Qingyun*. Size-fractioned aggregates within phycosphere define functional bacterial communities related to Microcystis aeruginosa and Euglena sanguinea blooms. Aquatic Ecology, 2020, 54: 609-623.
10. Zhuang Wei, Yu Xiaoli, Hu Ruiwen, Luo Zhiwen, Liu Xingyu, Zheng Xiafei, Xiao Fanshu, Peng Yisheng, He Qiang, Tian Yun, Yang Tony, Wang Shanquan, Shu Longfei, Yan Qingyun, Wang Cheng*, He Zhili*. Diversity, function and assembly of mangrove root-associated microbial communities at a continuous fine-scale. npj Biofilms and Microbiomes, 2020, 6: 52.
11. Li Zhou#, Juneau Philippe, Lian Yingli, Zhang Wei, Wang Shanquan, Wang Cheng, Shu Longfei, Yan Qingyun, He Zhili*, Kui Xu*#. Effects of titanium dioxide nanoparticles on photosynthetic and antioxidative processes of Scenedesmus obliquus. Plants-Basel, 2020, 9: 1748.
12. Yu Xiaoli, Yang Xueqin, Wu Yongjie, Peng Yisheng, Yang Tony, Xiao Fanshu, Zhong Qiuping, Xu Kui, Shu Longfei, He Qiang, Tian Yun, Yan Qingyun, Wang Cheng*, Wu Bo*, He Zhili*. Sonneratia apetala introduction alters methane cycling microbial communities and increases methane emissions in mangrove ecosystems. Soil Biology & Biochemistry, 2020, 144: 107775.
13. Feng Jiajie, Wang Cong, Lei Jiesi, Yang Yunfeng*, Yan Qingyun, Zhou Xishu, Tao Xuanyu, Ning Daliang, Yuan Mengting M, Qin Yujia, Shi Zhou J, Guo Xue, He Zhili, Van Nostrand Joy D, Wu Liyou, Bracho-Garillo Rosvel G, Penton C. Ryan, Cole James R, Konstantinidis Konstantinos T, Luo Yiqi, Schuur Edward A, Tiedje James M, Zhou Jizhong*. Warming-induced permafrost thaw exacerbates tundra soil carbon decomposition mediated by microbial community. Microbiome, 2020, 8: 3.
14. Tu Qichao*, Yan Qingyun, Deng Ye, Michaletz Sean T., Buzzard, Vanessa, Weiser Michael D., Waide, Robert, Ning Daliang, Wu Liyou, He Zhili, Zhou Jizhong*. Biogeographic patterns of microbial co-occurrence ecological networks in six American forests. Soil Biology & Biochemistry, 2020, 144: 107897.
15. 方安琪, 贺志理, 王成, 杨超, 颜庆云*. 红树林沉积物中微生物驱动硫循环研究进展. 微生物学报, 2020, 60: 1-13.
2019 and before
1. Xiao Fanshu, Bi Yonghong, Li Xinghao, Huang Jie, Yu Yuhe, Xie Zhicai, Fang Tao, Cao Xiuyun, He Zhili, Juneau Philippe, Yan Qingyun*. The impact of anthropogenic disturbance on bacterioplankton communities during the construction of Donghu tunnel (Wuhan, China). Microbial Ecology, 2019, 77: 277-287.
2. Li Xinghao, Yu Yuhe, Li Chang, Yan Qingyun*. Comparative study on the gut microbiotas of four economically important Asian carp species. Science China-Life Sciences, 2018, 61: 696-705.
3. Xiao Fanshu, Yu Yuhe, Li Jinjin, Juneau Philippe, Yan Qingyun*. Necessary sequencing depth and clustering method to obtain relatively stable diversity patterns in studying fish gut microbiota. Current Microbiology, 2018, 75: 1240-1246.
4. Li Hui, Xu Zhuwen, Yan Qingyun, Yang Shan, Van Nostrand Joy D., Wang Zhirui, He Zhili, Zhou Jizhong, Jiang Yong*, Deng Ye. Soil microbial beta-diversity is linked with compositional variation in aboveground plant biomass in a semi-arid grassland. Plant and Soil, 2018, 423: 465-480.
5. He Zhili*, Zhang Ping, Wu Linwei, Rocha Andrea M., Tu Qichao, Shi Zhou, Wu Bo, Qin Yujia, Wang Jianjun, Yan Qingyun, Curtis Daniel, Ning Daliang, Van Nostrand Joy D., Wu Liyou, Yang Yunfeng, Elias Dwayne A., Watson David B., Adams Michael W.W., Fields Matthew W., Alm Eric J., Hazen Terry C., Adams Paul D., Arkin Adam P., Zhou Jizhong*. Microbial functional gene diversity predicts groundwater contamination and ecosystem functioning. mBio, 2018, 9: e02435-17.
6. Liu Kaihui*, Ding Xiaowei*, Tang Xiaofei, Wang Jianjun, Li Wenjun, Yan Qingyun, Liu Zhenghua. Macro and microelements drive diversity and composition of prokaryotic and fungal communities in hypersaline sediments and saline-alkaline soils. Frontiers in Microbiology, 2018, 9: 352.
7. Hou Dongwei, Huang Zhijian*, Zeng Shenzheng, Liu Jian, Wei Dongdong, Deng Xisha, Weng Shaoping, Yan Qingyun, He Jianguo*. Intestinal bacterial signatures of white feces syndrome in shrimp. Applied Microbiology and Biotechnology, 2018, 102: 3701-3709.
8. Yan Qingyun*, Stegen James C., Yu Yuhe*, Deng Ye, Li Xinghao, Wu Shu, Dai Lili, Zhang Xiang, Li Jinjin, Wang Chun, Ni Jiajia, Li Xuemei, Hu Hongjuan, Xiao Fanshu, Feng Weisong, Ning Daliang, He Zhili, Van Nostrand Joy D., Wu Liyou, Zhou Jizhong*. Nearly a decade-long repeatable seasonal diversity patterns of bacterioplankton communities in the eutrophic Lake Donghu (Wuhan, China). Molecular Ecology, 2017, 26: 3839-3850.
9. Li Xinghao, Zhou Li, Yu Yuhe, Ni Jiajia, Xu Wenjie, Yan Qingyun*. Composition of gut microbiota in the gibel carp (Carassius auratus gibelio) varies with host development. Microbial Ecology, 2017, 74: 239-249.
10. Lu Qihong, Yu Ling, Liang Zhilwei, Yan Qingyun, He Zhili, Luan Tiangang, Liang Dawei, Wang Shangquan*. Dehalococcoides as a potential biomarker evidence for uncharacterized organohalides in environmental samples. Frontiers in Microbiology, 2017, 8: 1677.
11. Li Hui, Yang Shan, Xu Zhuwen, Yan Qingyun, Li Xiaobin, Van Nostrand Joy D., He Zhili, Yao Fei, Han Xingguo, Zhou Jizhong, Deng Ye*, Jiang Yong*. Responses of soil microbial functional genes to global changes are indirectly influenced by aboveground plant biomass variation. Soil Biology & Biochemistry, 2017, 104: 18-29.
12. Ni Jiajia, Yan Qingyun, Yu Yuhe*, Wu HH, Chen F. Dispersal patterns of endogenous bacteria among grass carp (Ctenopharyngodon idellus) guts. Iranian Journal of Fisheries Sciences, 2017, 16: 605-618.
13. Yan Qingyun*, Li Jinjin, Yu Yuhe*, Wang Jianjun, He Zhili, Van Nostrand Joy D., Kempher Megan L., Wu Liyou, Wang Yaping, Liao Lanjie, Li Xinghao, Wu Shu, Ni Jiajia, Wang Chun, Zhou Jizhong*. Environmental filtering decreases with fish development for the assembly of gut microbiota. Environmental Microbiology, 2016, 18: 4739-4754.
14. Zhou Jizhong*, Deng Ye*, Shen Lina, Wen Chongqing, Yan Qingyun, Ning Daliang, Qin Yujia, Xue Kai, Wu Liyou, He Zhili, Voordeckers James W., Van Nostrand Joy D., Buzzard Vanessa, Michaletz Sean T., Enquist Brian J., Weiser Michael D., Kaspari Michael, Waide Robert, Yang Yunfeng, Brown James H. Temperature mediates continental-scale diversity of microbes in forest soils. Nature Communications, 2016, 7: 12083.
15. Tu Qichao, Deng Ye, Yan Qingyun, Shen Lina, Lin Lu, He Zhili, Wu Liyou, Van Nostrand Joy D., Buzzard Vanessa, Michaletz Sean T., Enquist Brian J., Weiser Michael D., Kaspari Michael, Waide Robert B., Brown James H., Zhou Jizhong*. Biogeographic patterns of soil diazotrophic communities across six forests in the North America. Molecular Ecology, 2016, 25: 2937-2948.
16. Li Xuemei, Yan Qingyun, Ringo Einar, Wu Xingbing, He Yongfeng, Yang Deguo*. The influence of weight and gender on intestinal bacterial community of wild largemouth bronze gudgeon (Coreius guichenoti, 1874). BMC Microbiology, 2016, 16: 191.
17. Yan Qingyun#, Bi Yonghong#, Deng Ye, He Zhili, Wu Liyou, Van Nostrand Joy D., Shi Zhou, Li Jinjin, Wang Xi, Hu Zhengyu, Yu Yuhe*, Zhou Jizhong*. Impacts of the Three Gorges Dam on microbial structure and potential function. Scientific Reports, 2015, 5: 8605.
18. Zhang Yanying, Ling Juan, Yang Qingsong, Wen Chongqing, Yan Qingyun, Sun Hongyan, Van Nostrand Joy D., Shi Zhou, Zhou Jizhong, Dong Junde*. The functional gene composition and metabolic potential of coral-associated microbial communities. Scientific Reports, 2015, 5: 19161.
19. Lin Juan, Chen Jun, He Jun, Chen Jing, Yan Qingyun, Zhou Jizhong, Xie P*. Effects of microcystin-LR on bacterial and fungal functional genes profile in rat gut. Toxicon, 2015, 96: 50-56.
20. Ni Jiajia#, Yan Qingyun#, Yu Yuhe, Zhang Tanglin. Factors influencing the grass carp gut microbiome and its effect on metabolism. FEMS Microbiology Ecology, 2014, 87: 704-714.
21. Li Jinjin, Ni Jiajia, Li Jialin, Wang Chun, Li Xinghao, Wu Shu, Zhang Tanglin, Yu Yuhe, Yan Qingyun*. Comparative study on gastrointestinal microbiota of eight fish species with different feeding habits. Journal of Applied Microbiology, 2014, 117: 1750-1760.
22. Li Xuemei, Zhu Yongjiu, Yan Qingyun, Ringø Einar, Yang Deguo*. Do the intestinal microbiotas differ between paddlefish (Polyodon spathala) and bighead carp (Aristichthys nobilis) reared in the same pond? Journal of Applied Microbiology, 2014, 117: 1245-1252.
23. Ni Jiajia, Yan Qingyun, Yu Yuhe*, Zhang Tanglin. Fish gut microecosystem: a model for detecting spatial pattern of microorganisms. Chinese Journal of Oceanology and Limnology, 2014, 32: 54-57.
24. Zhang Xiang, Yan Qingyun, Yu Yuhe*, Dai Lili. Spatio-temporal pattern of bacterioplankton in Donghu Lake. Chinese Journal of Oceanology and Limnology, 2014, 32: 554-564.
25. Ni Jiajia#, Yan Qingyun#, Yu Yuhe*. How much metagenomic sequencing is enough to achieve a given goal? Scientific Reports, 2013, 3: 1968.
26. Li Xuemei#, Yan Qingyun#, Xie Shouqi, Hu Wei, Yu Yuhe*, Hu Zihua*. Gut microbiota contributes to the growth of fast-growing transgenic common carp (Cyprinus carpio L.). PLoS ONE, 2013, 8: e64577.
27. Yan Qingyun, Yu Yuhe*, Dai Lili. Tetrahymena-specific biomass evaluation with a DNA-based method. ScienceAsia, 2013, 39: 36-41.
28. Dai Lili, Yan Qingyun, Li Liang, Li Hong, Wang Lijing, Feng Weisong, Pan Gang*, Yu Yuhe*. Microplankton community dynamics during the algae removal process for nutrient control. Fresenius Environmental Bulletin, 2013, 22: 3759-3767.
29. Zhang Xiang, Feng Weisong, Yan Qingyun, Yu Yuhe*. Differences in DNA fingerprints of bacterioplankton community as affected by biomass collection approaches. Journal of Pure and Applied Microbiology, 2013, 7: 2731-2738.
30. Yan Qingyun, van der Gast Christopher J., Yu Yuhe*. Bacterial community assembly and turnover within the intestines of developing zebrafish. PLoS ONE, 2012, 7: e30603.
31. Li Xuemei, Yu Yuhe*, Feng Weisong, Yan Qingyun, Gong Yingchun. Host species as a strong determinant of the intestinal microbiota of fish larvae. Journal of Microbiology, 2012, 50: 29-37.
32. Li Xuemei, Yu Yuhe*, Zhang Tanglin, Feng Weisong, Ao Hongyi, Yan Qingyun. Seasonal variation of plankton communities influenced by environmental factors in an artificial lake. Chinese Journal of Oceanology and Limnology, 2012, 30: 397-403.
33. Yan Qingyun, Yu Yuhe*. Metagenome-based analysis: a promising direction for plankton ecological studies. Science China-Life Sciences, 2011, 54: 75-81.
34. Yan Qingyun, Yu Yuhe*, Feng Weisong. Diversity of nifH gene amplified from plankton community DNA in a shallow eutrophic lake (Lake Donghu, Wuhan). Limnology, 2011, 12: 245-251.
35. Li Xuemei, Yu Yuhe*, Xie Shouqi, Yan Qingyun, Chen Yuhang. Effect of chitosan on intestinal bacteria of allogynogenetic crucian carp, Carassius auratus gibelio as depicted by PCR-denaturing gradient gel electrophoresis. Journal of the World Aquaculture Society, 2011, 42: 539-548.
36. Ni Jiajia, Yu Yuhe*, Feng Weisong, Yan Qingyun, Pan Gang, Yang Bo, Zhang Xiang, Li Xuemei. Impacts of algal blooms removal by chitosan-modified soils on zooplankton community in Taihu Lake, China. Journal of Environmental Sciences-China, 2010, 22: 1500-1507.
37. Yan Qingyun, Yu Yuhe*, Feng Weisong, Pan Gang, Chen Hao, Chen Juan, Yang Bo, Li Xuemei, Zhang Xiang. Plankton community succession in artificial systems subjected to cyanobacterial blooms removal using chitosan-modified soils. Microbial Ecology, 2009, 58: 47-55.
38. Yu Yuhe#*, Yan Qingyun#, Feng Weisong. Spatiotemporal heterogeneity of plankton communities in Lake Donghu, China, as revealed by PCR-denaturing gradient gel electrophoresis and its relation to biotic and abiotic factors. FEMS Microbiology Ecology, 2008, 63: 328-337.
39. Yan Qingyun, Yu Yuhe*, Feng Weisong, Yu Zhigang, Chen Hongtao. Plankton community composition in the Three Gorges Reservoir Region revealed by PCR-DGGE and its relationships with environmental factors. Journal of Environmental Sciences-China, 2008, 20: 732-738.
40. Yan Qingyun, Yu Yuhe*, Feng Weisong, Deng Wenna, Song Xiaohong. Genetic diversity of plankton community as depicted by PCR-DGGE fingerprinting and its relation to morphological composition and environmental factors in Lake Donghu. Microbial Ecology, 2007, 54: 290-297.
41. Yan Qingyun, Yu Yuhe*, Feng Weisong. Genetic fingerprinting of plankton community provides new insights into aquatic ecology. Progress in Natural Science, 2006, 16: 893-898.
42. Yan Qingyun, Yu Yuhe*, Feng Weisong, Zhang Wenjing. DNA polymorphism of the plankton community and its relationships to species composition in the Three Gorges Reservoir Region of the Yangtze River. Journal of Freshwater Ecology, 2006, 21: 385-390.
43. 庄炜, 杨雪琴, 于晓莉, 颜庆云, 连英丽, 王成, 钟秋萍, 贺志理*. 微生物驱动的滨海湿地N2O产生及其机制研究进展. 微生物学通报, 2019, 46: 3440-3452.
44. 王彬浩, 关晓彤, 颜庆云, 贺志理*. 含氟有机废水处理过程活性污泥微生物群落研究进展. 微生物学通报, 2019, 46: 2020-2037.
45. 朱文根, 李星浩, 饶刘瑜, 黄洁, 余育和, 肖凡书, 颜庆云*. 感染草鱼呼肠孤病毒对肠道菌群多样性的影响. 水生生物学报, 2019, 43: 109-116.
46. 饶刘瑜, 李学梅, 李星浩, 朱文根, 余育和, 颜庆云*. 转基因鲤鱼与对照鲤肠道微生物群落差异研究. 水生生物学报, 2018, 42: 349-355.
47. 顾航, 肖凡书, 贺志理, 颜庆云*. 湿地微生物介导的甲烷排放机制. 微生物学报, 2018, 58: 618-632.
48. 杨雪琴, 连英丽, 颜庆云*, 贺志理*. 滨海湿地生态系统微生物驱动的氮循环研究进展. 微生物学报, 2018, 58: 633-648.
49. 吴波, 冯凯, 职晓阳, 何强, 许玫英, 邓晔, 肖凡书, 汪善全, 于玲, 鲁祺鸿, 连英丽, 罗丽娟, 原珂, 陈保卫, 颜庆云, 仇荣亮, 栾天罡, 贺志理*. 环境微生物组多样性及功能研究进展. 中山大学学报(自然科学版), 2017, 56: 1-11.
50. 胡红娟*, 黄小龙, 倪加加, 余育和, 吴辰熙, 颜庆云. 武汉市湖泊微型裸腹溞种群遗传结构比较分析. 水生态学杂志, 2016, 9: 37-41.
51. 王纯, 倪加加, 颜庆云, 李金金, 李星浩, 余育和*. 草鱼与团头鲂肠道菌群结构比较分析. 水生生物学报, 2014, 38: 868-875.
52. 李星浩, 颜庆云, 胡红娟, 李金金, 王纯, 余育和*. 异育银鲫消化道微生物群落对恢复投喂的响应. 水生生物学报, 2014, 38: 854-859.
53. 胡红娟, 颜庆云, 倪加加, 余育和*, 李学梅, 王纯. 武汉东湖圆形盘肠溞种群遗传结构分析. 水生生物学报, 2013, 37: 1007-1012.
54. 李金金, 倪加加, 李学梅, 颜庆云, 余育和*. 南方大口鲇消化道微生物与胃肠分化的关系. 水生生物学报, 2013, 37: 613-619.
55. 倪加加, 余育和*, 吴含含, 颜庆云, 陈芳. 不同DGGE谱带信息提取方法对分析结果的影响. 水生生物学报, 2012, 36: 1009-1011.
56. 潘纲*, 代立春, 李梁, 尚媛媛, 李宏, 毕磊, 何林宸, 王丽静, 王丹, 李巧霞, 黎丽雯, 古小治, 钟继承, 余育和, 颜庆云. 改性当地土壤技术修复富营养化水体综合效果研究: I. 水质改善的应急与长期效果与机制. 湖泊科学, 2012, 24: 801-810.
57. 李学梅, 余育和*, 解绶启, 颜庆云, 陈宇航, 董小林. 三种室内饲养鱼类肠道微生物群落PCR-DGGE指纹分析. 水生生物学报, 2011, 35: 423-429.
58. 颜庆云, 余育和*, 冯伟松. 武汉东湖浮游生物宏基因组与环境重金属的关系. 中国环境科学, 2010, 30: 52-56.
59. 颜庆云, 余育和*, 张堂林, 冯伟松, 李学梅. 滤食性鲢、鳙肠含物PCR-DGGE指纹分析. 水产学报, 2009, 33: 972-979.
60. 邓文娜, 余育和*, 颜庆云, 宋晓红, 张翔, 陈洪涛. 三峡库区浮游生物群落DNA结构与水体理化因子的分析. 水生生物学报, 2009, 33: 324-329.
61. 李学梅, 余育和*, 冯伟松, 颜庆云, 吴利, 张翔. 转基因鱼试验湖浮游生物群落DNA多态性与物种组成关系. 湖泊科学, 2009, 21: 375-381.
62. 颜庆云, 余育和*, 冯伟松, 刘永定, 胡春香, 唐辉远, 彭亮, 邱子健. 松花江浮游生物群落DNA指纹与物种组成比较研究. 应用与环境生物学报, 2008, 14: 59-63.
63. 颜庆云, 余育和*, 冯伟松, 于志刚, 陈洪涛. 三峡库区浮游生物群落DNA指纹结构空间异质性. 水生生物学报, 2008, 32: 18-23.
64. 颜庆云*, 余育和. 草履虫的运动与摄食. 生物学通报, 2008, 43: 19-20.
65. 李学梅, 余育和*, 冯伟松, 颜庆云, 敖鸿毅. 转基因鱼试验湖浮游生物群落DNA指纹与理化因子的关系. 水生态学杂志, 2008, 1: 20-24.
66. 张翔, 余育和*, 冯伟松, 颜庆云, 吴利, 刘志新. 原生动物在水环境监测中的作用. 水生生物学报, 2008, 32: 149-154.
67. 张翔, 余育和*, 冯伟松, 周伟, 颜庆云. 污水处理厂中浮游生物群落DNA指纹及其与水质指标的关系. 环境科学学报, 2008, 28: 1526-1533.
68. 吴利, 余育和*, 张堂林, 冯伟松, 颜庆云, 龚迎春, 宋晓红. 牛山湖浮游生物群落DNA指纹结构与理化因子的关系. 湖泊科学, 2008, 20: 235-241.
69. 宋晓红, 余育和*, 冯伟松, 颜庆云, 邓文娜. 东湖浮游生物群落DNA指纹结构及其与环境理化因子的关系. 应用生态学报, 2007, 18: 2860-2864.
70. 邓文娜, 余育和*, 冯伟松, 颜庆云, 宋晓红, 刘志新. 三峡库区浮游生物群落结构与DNA多态性比较分析. 湖泊科学, 2007, 19: 333-339.
71. 颜庆云, 舒少武, 冯伟松, 胡炜, 宋碧玉, 汪亚平, 余育和*. 转基因鱼试验湖浮游生物群落DNA指纹拓扑结构与优势种的关系. 自然科学进展, 2006, 16: 889-893.
72. 张文静, 余育和*, 沈韫芬, 颜庆云. 七株眼虫基于微卫星DNA指纹图谱的区分和关系分析. 湖泊科学, 2006, 18: 285-292.
73. 颜庆云, 余育和*, 冯伟松. 洞庭湖浮游生物群落DNA指纹拓扑结构与物种组成对应关系. 生态学报, 2005, 25: 2221-2226.
74. 颜庆云, 余育和*, 张文静. 武汉东湖浮游生物群落DNA多态性与富营养化. 生态学报, 2005, 25: 461-465.
75. 颜庆云, 余育和*, 冯伟松, 梁小民, 谢平. 洞庭湖浮游生物群落DNA指纹与理化因子的关系. 水生生物学报, 2005, 29: 601-606.
76. 余育和*, 张文静, 颜庆云. DNA指纹分析技术在群落级生命系统应用的可能性. 水生生物学报, 2004, 28: 457-463.
