1. 2017/04-至今，中山大学，海洋科学学院，教授

1.国家基金面上项目,2020.1-2024.12，62万，在研，主持
2.中山大学青年教师重点培育项目，2018.1-2019.12，30万，结题，主持
3.国家自然基金委优秀青年基金项目：海洋真核微生物多样性，2016.1-2018.12，150万，结题，主持
4.青岛海洋科学与技术国家实验室鳌山科技创新计划项目（子课题），2018.1-2020.12，140万，在研，子课题负责人
5.国家基金面上项目,2016.1-2019.12，62万，结题，主持
6.中国科学院战略性先导科技专项（子任务），2013.1-2017.12，140万，结题，骨干
7.山东省杰出青年基金项目，2012.1-2015.12，50万，结题，主持
8.中科院知识创新工程重要方向项目,2010.1-2013.12,100万，结题，主持
9.中国科学院百人计划项目，2010-2013，200万，结题，主持
10.欧盟第六框架个人研究项目，2007-2009，21.9万欧元，结题，主持

1.Zhang X., Zhang Q., Yang A., Hou L., Zheng Y., Zhai W., Gong J.* (2018) Incorporation of microbial functional traits in biogeochemistry models provides better estimations of benthic denitrification and anammox rates in coastal oceans. J. Geophys. Res. Biogeosci. 123(10): 3331-3352.
2.Wang Y., Guo X., Zheng P., Zou S., Li G., Gong J.* (2017) Distinct seasonality of cytrid-dominated benthic fungal communities in neritic oceans (Bohai Sea and North Yellow Sea). Fung. Ecol. 30: 55-66.
3. Fu R., Gong J.* (2017) Single cell analysis linking ribosomal (r)DNA and rRNA copy numbers to cell size and growth rate provides insights into molecular protistan ecology. J. Eukaryot. Microbiol. 64: 885–896.
4. Gong J.*, Qing Y., Zou S., Fu R., Su L., Zhang X., Zhang Q. (2016) Protist-bacteria associations: Gammaproteobacteria and Alphaproteobacteria are prevalent as digestion-resistant bacteria in ciliated protozoa. Front. Microbiol. 7:498.
5. Gong J.*, Shi F., Ma B., Dong J., Pachiadaki M., Zhang X., Edgcomb V.P. (2015) Depth shapes α- and β-diversities of microbial eukaryotes in surficial sediments of coastal ecosystems. Environ. Microbiol. 17(10):3722–3737.
6. Gong J.*, Qing Y., Guo X., Warren A. (2014) "Candidatus Sonnebornia yantaiensis", a member of the candidate division OD1, as intracellular bacteria of the ciliated protist Paramecium bursaria (Ciliophora, Oligohymenophorea). Syst. Appl. Microbiol. 37:35-41.
7. Gong J.*, Dong J., Liu X., Massana R. (2013) Extremely high copy numbers and polymorphisms of the rDNA operon estimated from single cell analysis of oligotrich and peritrich ciliates. Protist 164:369-379.